DR. JOHN JOSEPH FLAHERTY JR. M.D., MPH
NPI 1528143807
Emergency Medicine in La Crosse, WI

Active since October 26, 2006PECOS EnrolledAccepts Medicare Assignment
83.84/100
CMS Quality Rating
1836 SOUTH AVE, LA CROSSE, WI 54601(608) 782-7300 Get Directions Write a Review

NPPES record last updated: April 3, 2026. Verified against the NPPES registry weekly; last sync: November 08, 2026.

Record update history: Apr 3, 2026, Jun 24, 2025 (2 updates tracked since 2025).

About Dr. John Joseph Flaherty Jr. M.d., Mph NPPES

Official registry information on file with the National Plan and Provider Enumeration System.

DR. JOHN JOSEPH FLAHERTY JR. M.D., MPH (NPI 1528143807) is an individual emergency medicine provider in La Crosse, Wisconsin, licensed in Wisconsin (86972) and active in the NPI registry since October 2006. He is enrolled in Medicare PECOS, is affiliated with Gundersen Lutheran Medical Center, and maintains 14 additional practice locations.

NPPES Registry Identity

NPI1528143807
Entity TypeIndividualMale
Primary Taxonomy207P00000X
Provider Legal NameDR. JOHN JOSEPH FLAHERTY JR.Credential: M.D., MPH
Location Address1836 SOUTH AVELa Crosse, WI 54601-5429
Mailing Address1836 South AveLa Crosse, WI 54601-5429 · (608) 782-7300
Sole ProprietorNo
Medical School CMSOtherGraduated 1981
Enumeration DateOctober 26, 2006
Last NPPES UpdateApril 3, 20262 updates tracked since enumeration
NPPES CertifiedApril 3, 2026
✔ NPI 1528143807 is a valid, active identifier and passes the ISO check-digit test.

Specialties & Licenses 2

★ Primary SpecialtyEmergency MedicineAllopathic & Osteopathic Physicians
Taxonomy Code207P00000X
Licenses✔ Licensed in WI · 86972✔ Licensed in IL · 036064476✔ Licensed in MN · 81701
Definition
An emergency physician focuses on the immediate decision making and action necessary to prevent death or any further disability both in the pre-hospital setting by directing emergency medical technicians and in the emergency department. The emergency physician provides immediate recognition, evaluation, care, stabilization and disposition of a generally diversified population of adult and pediatric patients in response to acute illness and injury.
Also ListedGeneral PracticeTaxonomy 208D00000X · License MD2022-1413 (NM)
1836 SOUTH AVE, La Crosse, WI 54601

Secondary Practice Locations 14

Location 16565 Americas Pkwy NE Ste 200Albuquerque, NM 87110-8172 · Phone (866) 273-2451
Location 2115 E College BlvdRoswell, NM 88201-5158 · Phone (866) 273-2451
Location 31408 8th StAlamogordo, NM 88310-5115 · Phone (866) 273-2451 · Fax (866) 608-5560
Location 4100 Gossett Dr Ste BAztec, NM 87410-4529 · Phone (866) 273-2451
Location 5201 N 4th StArtesia, NM 88210-2168 · Phone (866) 273-2451
Location 6301 N Canyon StCarlsbad, NM 88220-5809 · Phone (866) 273-2451
Location 7950 W Aztec AveGallup, NM 87301-6666 · Phone (866) 273-2451
Location 81012 Marquez Pl Unit 106BSanta Fe, NM 87505-1833 · Phone (866) 273-2451
Location 9201 E Las Cruces Ave Ste. 1501Las Cruces, NM 88001 · Phone (866) 273-2451
Location 10221 N Kansas St Ste 700El Paso, TX 79901-1444 · Phone (866) 273-2451
Location 112705 S Alma School Rd Ste 2Chandler, AZ 85286-4400 · Phone (866) 273-2451
Location 122301 E 20th StFarmington, NM 87401-8905 · Phone (866) 273-2451
Location 13500 N Hudson StSilver City, NM 88061-5435 · Phone (866) 273-2451
Location 141224 W 21st StClovis, NM 88101-4199 · Phone (866) 273-2451

Accepted Insurance

Medicare Participation & PECOS CMS

Medicare enrollment, assignment, billing reassignment, and ordering and referring status from CMS.

Medicare Enrollment Status

✔

Enrolled in Medicare and accepts Medicare assignment

Dr. John Joseph Flaherty Jr. M.d., Mph is registered in PECOS and agrees to accept the Medicare-approved amount as full payment. Medicare patients are not billed beyond the standard deductible and coinsurance.

PECOS PAC ID7315978780
PECOS Enrollment IDI20221227000800, I20260413000512, I20260413000653
Eligible to Order & Refer✔ Part B Labs & Imaging✔ Durable Medical Equipment✔ Home Health Agency✔ Power Mobility DevicesPer the CMS Ordering and Referring file. Eligibility means Medicare pays claims that this provider orders or refers for these categories.

Medicare Billing Reassignments

12

Medicare enrollment records show John Flaherty reassigns Medicare billing to 12 organizations. Each organization bills Medicare for the services this provider delivers there; the nearest is listed first.

Clinic/Center
1836 SOUTH AVE
La Crosse, WI 54601
  • Reassigned Medicare billing, Wisconsin and Minnesota enrollments
  • Also billed through NPI 1376593442 (Minnesota)
  • 1,457 clinicians in this Medicare group
Rural Health
420 S PETERSON AVE
Blair, WI 54616
  • Reassigned Medicare billing, Wisconsin enrollment
  • Also billed through NPI 1124063573 (Wisconsin)
  • 293 clinicians in this Medicare group
Critical Access
400 WATER AVE
Hillsboro, WI 54634
  • Reassigned Medicare billing, Wisconsin enrollment
  • Medicare enrollment name: St Josephs Health Services Inc
  • 282 clinicians in this Medicare group
Critical Access
205 PARKER ST
Boscobel, WI 53805
  • Reassigned Medicare billing, Wisconsin enrollment
  • Also billed through NPI 1306804794 (Wisconsin)
  • 76 clinicians in this Medicare group
Home Health
1200 GRANT BLVD W
Wabasha, MN 55981
  • Reassigned Medicare billing, Minnesota enrollment
  • 147 clinicians in this Medicare group
Critical Access
402 W LAKE ST
Friendship, WI 53934
  • Reassigned Medicare billing, Wisconsin enrollment
  • 67 clinicians in this Medicare group
Anesthesiology
2650 RIDGE AVE, ANESTHESIOLOGY ROOM 3905
Evanston, IL 60201
  • Reassigned Medicare billing, Illinois enrollment
  • 4,841 clinicians in this Medicare group
Emergency Medicine
4500 MEMORIAL DR
Belleville, IL 62226
  • Reassigned Medicare billing, Illinois enrollment
  • 111 clinicians in this Medicare group
Emergency Medicine
2100 N DR MARTIN LUTHER KING JR BLVD
Clovis, NM 88101
  • Reassigned Medicare billing, New Mexico enrollment
  • 65 clinicians in this Medicare group
Emergency Medicine
4900 N LOVINGTON HWY
Hobbs, NM 88240
  • Reassigned Medicare billing, New Mexico enrollment
  • 119 clinicians in this Medicare group

Source: CMS Revalidation Reassignment List, October 2026 release. Reassignment records can lag staffing changes; confirm a current affiliation with the organization.

Areas of Expertise CMS Part B claims

Services this provider delivered to Medicare fee-for-service patients, from the CMS Medicare utilization data. Higher counts generally reflect more experience with a service; care delivered outside Medicare is not included.

Emergency department visit with moderate level of medical decision making 99284
An emergency department visit for a high-severity issue means you're experiencing a serious health problem that needs immediate attention. This could be a severe injury, serious illness, or life-threatening condition. Medical professionals will provide urgent care to stabilize your condition.
15 services15 patients

Hospital Affiliations CMS Care Compare

Hospitals where this provider delivers care, identified from recent Medicare claims and place-of-service records.

Gundersen Lutheran Medical Center

Acute Care Hospitals · La Crosse, WI
4/5 CMS rating
OwnershipVoluntary non-profit - Private
CMS Certification Number520087
Location1910 South AveLa Crosse, WI 54601 · La Crosse County
Emergency services Birthing friendly

Physician Visit Costs CMS claims · ZIP area

Typical Medicare office-visit costs in the 54601 ZIP code area, from fee-for-service claims. These are area statistics, not this provider’s prices; actual charges vary by service and coverage.

New Patient
$82.92 typical visit price
range $53.90 – $163.24
Typical copayment $20.73 (range $13.47 – $40.81)
Most-billed visit code 99203
Established Patient
$95.41 typical visit price
range $17.40 – $133.76
Typical copayment $23.85 (range $4.35 – $33.44)
Most-billed visit code 99214
Amounts reflect what Medicare beneficiaries in this ZIP area are typically charged for office visits. Patients with other coverage should check their individual plans.

Medicare Quality Performance CMS QPP · MIPS

Performance in the CMS Quality Payment Program: the MIPS final score across four weighted categories, and the individual quality measures reported to Medicare.

83.84/100
MIPS Final ScoreMerit-based Incentive Payment System · CMS Quality Payment Program
Scored as part of a group practice
Quality84.59
Promoting Interoperability100
Improvement Activities40
Cost58.63

Other Providers at the Same Location NPPES 20

Providers registered at the same practice address, or within the immediate area, according to the NPPES registry.

Anesthesiology
1836 SOUTH AVE, GUNDERSEN CLINIC, LTD.
LA CROSSE, WI 54601
Nurse Anesthetist, Certified Registered
1836 SOUTH AVE
LA CROSSE, WI 54601
Psychologist
1836 SOUTH AVE
LA CROSSE, WI 54601
Surgery
1836 SOUTH AVE
LA CROSSE, WI 54601
Nurse Practitioner (Adult Health)
1836 SOUTH AVE
LA CROSSE, WI 54601
Orthopaedic Surgery
1836 SOUTH AVE
LA CROSSE, WI 54601
Registered Nurse (Addiction (Substance Use Disorder))
1836 SOUTH AVE
LA CROSSE, WI 54601
Nurse Practitioner (Family)
1836 SOUTH AVE
LA CROSSE, WI 54601

Frequently Asked Questions NPPES & CMS

Common questions about this NPI record, answered from the official NPPES registry and CMS datasets shown on this page.

What is John Flaherty's NPI number?

The NPI number for John Flaherty is 1528143807. It was assigned to this individual provider in the NPPES registry on October 26, 2006.

Where is John Flaherty located?

John Flaherty practices at 1836 South Ave, La Crosse, WI 54601. The listed phone number is (608) 782-7300.

What is John Flaherty's specialty?

The primary specialty registered for this NPI is Emergency Medicine with taxonomy code 207P00000X.

Is John Flaherty enrolled in Medicare?

Yes. John Flaherty is registered in the Medicare PECOS system and accepts Medicare assignment, which means accepting the Medicare-approved amount as payment in full for covered services.

Which organizations bill Medicare for John Flaherty's services?

According to the CMS Revalidation Reassignment List (October 2026 release), John Flaherty reassigns Medicare benefits to 12 organizations: Gundersen Lutheran Medical Center, Inc (La Crosse, WI), Tri-County Memorial Hospital, Inc. (Blair, WI), St. Joseph's Health Services, Inc. (Hillsboro, WI), Memorial Hospital Of Boscobel (Boscobel, WI), Saint Elizabeths Hospital Of Wabasha Inc (Wabasha, MN) and 7 more organizations, listed in the Medicare section above. Each reassignment is filed with Medicare on form CMS-855R, signed by both the clinician and the organization, and lets the organization bill Medicare and receive payment for John Flaherty's services. Reassignment records can lag staffing changes; confirm current arrangements with the organization.

What insurance does John Flaherty accept?

Health plans from Medica and Wellmark Health Plan of Iowa, Inc. list John Flaherty as in-network in at least one marketplace plan. Coverage varies by plan and year; verify with the insurer or the provider before a visit.

Is John Flaherty affiliated with any hospitals?

According to CMS data, John Flaherty is affiliated with Gundersen Lutheran Medical Center.

When was this NPI record last updated?

The NPPES record for John Flaherty was last updated on April 3, 2026. NPI Profile syncs weekly with the NPPES registry data releases published by CMS. This NPI record was last updated 7 months ago. If this record has changed at CMS more recently, you can request an on-demand re-check against the live CMS registry, directly from this page.